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GrainGenes Marker Report: k00174

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Locus	k00174
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 81.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak16f06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HhaI SNP = G/A SNP structure (UNICODE) = AAGCAGCACARCGCCGTGAAC Parent 1 SNP sequence = AAGCAGCACAGCGCCGTGAAC Parent 2 SNP sequence = AAGCAGCACAACGCCGTGAAC Recognized sequence for CAPs locus = GCGC SNP = C/T SNP structure (UNICODE) = TGGGGGTCTCYGCTGCGCCTT Parent 1 SNP sequence = TGGGGGTCTCCGCTGCGCCTT Parent 2 SNP sequence = TGGGGGTCTCTGCTGCGCCTT
Probe for Locus	baak16f06
Locus	k00174
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - CCACAAGTGAAGTTGCGTTG Right 5' - AGCCAGCTGAGGTTGTTGAT
Sequence	BM099621
PCR size	376