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GrainGenes Marker Report: k00189

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Locus	k00189
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak17l11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/A SNP structure (UNICODE) = AATGCCACGGWTACTCATTGA Parent 1 SNP sequence = AATGCCACGGTTACTCATTGA Parent 2 SNP sequence = AATGCCACGGATACTCATTGA SNP = C/G SNP structure (UNICODE) = GCCTGGAAAASGCAGTTTTCC Parent 1 SNP sequence = GCCTGGAAAACGCAGTTTTCC Parent 2 SNP sequence = GCCTGGAAAAGGCAGTTTTCC
Probe for Locus	baak17l11
Locus	k00189
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TACTCCTCGCATAAGGTGGG Right 5' - CATCTGCAGAACCTCCTGGT
Sequence	BJ455656
PCR size	351