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GrainGenes Marker Report: k00196

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Locus	k00196
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 173.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak1g13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = A/G SNP structure (UNICODE) = TACACTCTAARGATGTCTACT Parent 1 SNP sequence = TACACTCTAAAGATGTCTACT Parent 2 SNP sequence = TACACTCTAAGGATGTCTACT SNP = G/A SNP structure (UNICODE) = CCGCAATTGARATAGGGCTCC Parent 1 SNP sequence = CCGCAATTGAGATAGGGCTCC Parent 2 SNP sequence = CCGCAATTGAAATAGGGCTCC SNP structure (UNICODE) = ATAAATGTGCRCTAGGAAATT Parent 1 SNP sequence = ATAAATGTGCACTAGGAAATT Parent 2 SNP sequence = ATAAATGTGCGCTAGGAAATT SNP = T/C SNP structure (UNICODE) = TGCGACTCGGYTCCTATGGTG Parent 1 SNP sequence = TGCGACTCGGTTCCTATGGTG Parent 2 SNP sequence = TGCGACTCGGCTCCTATGGTG SNP = C/G SNP structure (UNICODE) = AGTTATGTGASAAGAAAAGGA Parent 1 SNP sequence = AGTTATGTGACAAGAAAAGGA Parent 2 SNP sequence = AGTTATGTGAGAAGAAAAGGA SNP = A/T SNP structure (UNICODE) = AGTGCTCACAWCAACTCTCCG Parent 1 SNP sequence = AGTGCTCACAACAACTCTCCG Parent 2 SNP sequence = AGTGCTCACATCAACTCTCCG
Probe for Locus	baak1g13
Locus	k00196
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Transcription initiation factor IIB (General transcription factor TFIIB)
Type	PCR
PCR primers	Left 5' - CATAATATGCAGGGCCGACT Right 5' - AATTGTAAATGCTGCCAGGG
Sequence	BQ665659
PCR size	450