Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k00204

[Submit comment/correction]

Locus	k00204
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 124.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak21h06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = G/C SNP structure (UNICODE) = TCCAGTTGCGSTTGAGGGTGG Parent 1 SNP sequence = TCCAGTTGCGGTTGAGGGTGG Parent 2 SNP sequence = TCCAGTTGCGCTTGAGGGTGG Recognized sequence for CAPs locus = GCGC
Probe for Locus	baak21h06
Locus	k00204
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = senescence-associated protein-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCGCAAGCTTTCTTCACTC Right 5' - GTCTAGCCCGAACCCTAACC
Sequence	BJ461981
PCR size	467