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GrainGenes Marker Report: k00208

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Locus	k00208
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 290.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak1g17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = ACATGAAACARACTCAGACCT Parent 1 SNP sequence = ACATGAAACAAACTCAGACCT Parent 2 SNP sequence = ACATGAAACAGACTCAGACCT SNP = T/C SNP structure (UNICODE) = AACAGAGCACYGTTCGTTTCA Parent 1 SNP sequence = AACAGAGCACTGTTCGTTTCA Parent 2 SNP sequence = AACAGAGCACCGTTCGTTTCA SNP = C/G SNP structure (UNICODE) = GTGGTTTTTTSCGCTACTTCA Parent 1 SNP sequence = GTGGTTTTTTCCGCTACTTCA Parent 2 SNP sequence = GTGGTTTTTTGCGCTACTTCA
Probe for Locus	baak1g17
Locus	k00208
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = photosystem II stability/assembly factor, chloroplast (HCF136) [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCAGAAGCTCAACTCAGGCT Right 5' - AGGAGGAAGATGATGCGATG
Sequence	BJ482848
PCR size	354