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GrainGenes Marker Report: k00243

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Locus	k00243
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 92.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak1d12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = ATTATCAAACRGAATAGTCCC Parent 1 SNP sequence = ATTATCAAACGGAATAGTCCC Parent 2 SNP sequence = ATTATCAAACAGAATAGTCCC SNP = T/C SNP structure (UNICODE) = ATTTGGCATGYCTCAGAAATT Parent 1 SNP sequence = ATTTGGCATGTCTCAGAAATT Parent 2 SNP sequence = ATTTGGCATGCCTCAGAAATT SNP = C/T SNP structure (UNICODE) = TGCATTCTCTYGTTCGACAGG Parent 1 SNP sequence = TGCATTCTCTCGTTCGACAGG Parent 2 SNP sequence = TGCATTCTCTTGTTCGACAGG
Probe for Locus	baak1d12
Locus	k00243
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = S1 RNA-binding domain-containing protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CCATGCAAAGAAACGAGGTT Right 5' - TCGAACCATAGAGGGTGAGG
Sequence	AV911740
PCR size	378