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GrainGenes Marker Report: k00297

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Locus	k00297
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 143.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak24h12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/C SNP structure (UNICODE) = ATATGCTACCMCTAAGCTGCA Parent 1 SNP sequence = ATATGCTACCACTAAGCTGCA Parent 2 SNP sequence = ATATGCTACCCCTAAGCTGCA SNP = G/A SNP structure (UNICODE) = CACACTAGATRAGATGGAGGG Parent 1 SNP sequence = CACACTAGATGAGATGGAGGG Parent 2 SNP sequence = CACACTAGATAAGATGGAGGG
Probe for Locus	baak24h12
Locus	k00297
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative microtubule-severing protein subunit [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCGACTACCCACCACACAAA Right 5' - CCCTTGCTTGGGAAGAATAA
Sequence	BJ462253
PCR size	461