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GrainGenes Marker Report: k00301

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Locus	k00301
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 20.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak21l22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 14 ] SNP = C/G SNP structure (UNICODE) = AACAGCTAAGSGTATTTGGGC Parent 1 SNP sequence = AACAGCTAAGCGTATTTGGGC Parent 2 SNP sequence = AACAGCTAAGGGTATTTGGGC SNP = G/A SNP structure (UNICODE) = TTTCAGAAGCRGATTGAAACT Parent 1 SNP sequence = TTTCAGAAGCGGATTGAAACT Parent 2 SNP sequence = TTTCAGAAGCAGATTGAAACT SNP structure (UNICODE) = CTTTAGAAGARCTACCTCACC Parent 1 SNP sequence = CTTTAGAAGAGCTACCTCACC Parent 2 SNP sequence = CTTTAGAAGAACTACCTCACC SNP structure (UNICODE) = TTCAGGCACARACATCAGGTA Parent 1 SNP sequence = TTCAGGCACAGACATCAGGTA Parent 2 SNP sequence = TTCAGGCACAAACATCAGGTA
Probe for Locus	baak21l22
Locus	k00301
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Centrin [Oryza sativa (japonica cultivar-group)] gb AAK13107.1 Centrin [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CCCATCATGCAACAACAAAG Right 5' - GTTGTGAAGTGGGCAAGGTT
Sequence	BJ448926
PCR size	472