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GrainGenes Marker Report: k00321

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Locus	k00321
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 80.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak24k18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HphI SNP = C/T SNP structure (UNICODE) = CCCCCTGTGGYCACCTCTGGC Parent 1 SNP sequence = CCCCCTGTGGCCACCTCTGGC Parent 2 SNP sequence = CCCCCTGTGGTCACCTCTGGC Recognized sequence for CAPs locus = NNNNNNNTCACC
Probe for Locus	baak24k18
Locus	k00321
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GGCTCCCAAGAAACATTACAA Right 5' - TTGGAATACCGGAAGAGCAG
Sequence	BJ462299
PCR size	425