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GrainGenes Marker Report: k00325

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Locus	k00325
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 87.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak21m13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 26 ] SNP = A/T SNP structure (UNICODE) = TGGCTCTATGWAGGAATCTTC Parent 1 SNP sequence = TGGCTCTATGAAGGAATCTTC Parent 2 SNP sequence = TGGCTCTATGTAGGAATCTTC SNP = G/A SNP structure (UNICODE) = ATTTAGATGARTCGACTATAC Parent 1 SNP sequence = ATTTAGATGAGTCGACTATAC Parent 2 SNP sequence = ATTTAGATGAATCGACTATAC SNP structure (UNICODE) = CATTCCTCATRTACCATTTAG Parent 1 SNP sequence = CATTCCTCATGTACCATTTAG Parent 2 SNP sequence = CATTCCTCATATACCATTTAG SNP = T/A SNP structure (UNICODE) = AAAATAATTCWGTACTTCTGG Parent 1 SNP sequence = AAAATAATTCTGTACTTCTGG Parent 2 SNP sequence = AAAATAATTCAGTACTTCTGG SNP = C/T SNP structure (UNICODE) = GTTTTACCTGYTGCGGCCCTT Parent 1 SNP sequence = GTTTTACCTGCTGCGGCCCTT Parent 2 SNP sequence = GTTTTACCTGTTGCGGCCCTT SNP = G/T SNP structure (UNICODE) = ATGAGTTTAGKGCGTCGAGCT Parent 1 SNP sequence = ATGAGTTTAGGGCGTCGAGCT Parent 2 SNP sequence = ATGAGTTTAGTGCGTCGAGCT SNP structure (UNICODE) = TAAGGAAAAAWTTCGCACTTG Parent 1 SNP sequence = TAAGGAAAAAATTCGCACTTG Parent 2 SNP sequence = TAAGGAAAAATTTCGCACTTG
Probe for Locus	baak21m13
Locus	k00325
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = thiF family protein [Arabidopsis thaliana] pir D86188 hypothetical protein [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - TCCGTTGCTTCTTCTACCTCA Right 5' - CCTTCCACCAAGAGCTCTACC
Sequence	BJ462075
PCR size	367