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GrainGenes Marker Report: k00327

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Locus	k00327
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 111.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak22c16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 29 ] SNP = G/A SNP structure (UNICODE) = GCTCCCTGCARTCCATATTAA Parent 1 SNP sequence = GCTCCCTGCAGTCCATATTAA Parent 2 SNP sequence = GCTCCCTGCAATCCATATTAA SNP = A/G SNP structure (UNICODE) = CATTGCAATCRTAGCAAAAAG Parent 1 SNP sequence = CATTGCAATCATAGCAAAAAG Parent 2 SNP sequence = CATTGCAATCGTAGCAAAAAG SNP structure (UNICODE) = TGAAGACATARTAATCAGCAG Parent 1 SNP sequence = TGAAGACATAATAATCAGCAG Parent 2 SNP sequence = TGAAGACATAGTAATCAGCAG SNP = T/G SNP structure (UNICODE) = CAGGGCTTGTKAATAGTTTTA Parent 1 SNP sequence = CAGGGCTTGTTAATAGTTTTA Parent 2 SNP sequence = CAGGGCTTGTGAATAGTTTTA SNP structure (UNICODE) = ATCTCACTGARAACAGAGCAT Parent 1 SNP sequence = ATCTCACTGAAAACAGAGCAT Parent 2 SNP sequence = ATCTCACTGAGAACAGAGCAT SNP = T/A SNP structure (UNICODE) = GGGAACATGTWCATGCTTCGG Parent 1 SNP sequence = GGGAACATGTTCATGCTTCGG Parent 2 SNP sequence = GGGAACATGTACATGCTTCGG SNP = C/- SNP structure (UNICODE) = TCCGCAGGGCC/-TGTCTCCCAG Parent 1 SNP sequence = TCCGCAGGGCCTGTCTCCCAG Parent 2 SNP sequence = TCCGCAGGGC-TGTCTCCCAG SNP structure (UNICODE) = TGCATCACAGC/-ACGATCAACA Parent 1 SNP sequence = TGCATCACAGCACGATCAACA Parent 2 SNP sequence = TGCATCACAG-ACGATCAACA
Probe for Locus	baak22c16
Locus	k00327
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative nifU-like protein [Oryza sativa (japonica cultivar-group)] dbj BAB91740.1 putative nifU-like protein [Oryza sativa (japonica culti
Type	PCR
PCR primers	Left 5' - GTGACGGGTTTTGCAGAGAT Right 5' - TATTGATGGGGACGAAGAGG
Sequence	BJ456485
PCR size	407