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GrainGenes Marker Report: k00332

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Locus	k00332
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 173.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak24e23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 31 ] SNP = A/C SNP structure (UNICODE) = TAATGTCAGAMATCATGAGAA Parent 1 SNP sequence = TAATGTCAGAAATCATGAGAA Parent 2 SNP sequence = TAATGTCAGACATCATGAGAA SNP = C/A SNP structure (UNICODE) = CCACACTGCTMAAGGGACTCC Parent 1 SNP sequence = CCACACTGCTCAAGGGACTCC Parent 2 SNP sequence = CCACACTGCTAAAGGGACTCC SNP = G/T SNP structure (UNICODE) = AAAAATGTTCKCAAGGATGTT Parent 1 SNP sequence = AAAAATGTTCGCAAGGATGTT Parent 2 SNP sequence = AAAAATGTTCTCAAGGATGTT SNP = T/A SNP structure (UNICODE) = CAGAAACAAGWCATTATGGTC Parent 1 SNP sequence = CAGAAACAAGTCATTATGGTC Parent 2 SNP sequence = CAGAAACAAGACATTATGGTC SNP = G/A SNP structure (UNICODE) = ATTTGCAATARTTAGTATATC Parent 1 SNP sequence = ATTTGCAATAGTTAGTATATC Parent 2 SNP sequence = ATTTGCAATAATTAGTATATC SNP = C/T SNP structure (UNICODE) = ACACGCTACTYATAGTCGACA Parent 1 SNP sequence = ACACGCTACTCATAGTCGACA Parent 2 SNP sequence = ACACGCTACTTATAGTCGACA SNP structure (UNICODE) = AACTCCCACAKGTATAAATGA Parent 1 SNP sequence = AACTCCCACAGGTATAAATGA Parent 2 SNP sequence = AACTCCCACATGTATAAATGA SNP = T/C SNP structure (UNICODE) = TGATGGTCAGYGGATAATAAT Parent 1 SNP sequence = TGATGGTCAGTGGATAATAAT Parent 2 SNP sequence = TGATGGTCAGCGGATAATAAT
Probe for Locus	baak24e23
Locus	k00332
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AACCGAACTGTTCCACGAGT Right 5' - GTGAAGGACCTGGTGATGCT
Sequence	BJ462211
PCR size	380