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GrainGenes Marker Report: k00356

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Locus	k00356
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 10
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak24g04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = G/T SNP structure (UNICODE) = AACAAGACGCKGCCGTCCTTG Parent 1 SNP sequence = AACAAGACGCGGCCGTCCTTG Parent 2 SNP sequence = AACAAGACGCTGCCGTCCTTG Recognized sequence for CAPs locus = GGCC
Probe for Locus	baak24g04
Locus	k00356
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 26S proteasome regulatory particle non-ATPase subunit12 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCAGAAGAAAGAACGTTGGG Right 5' - ACTTTGAGGAAGCGTCGGTA
Sequence	BJ552387
PCR size	380