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GrainGenes Marker Report: k00407

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Locus	k00407
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 95.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak30l02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/C SNP structure (UNICODE) = GAGCAGCAGASATTGTGCATG Parent 1 SNP sequence = GAGCAGCAGAGATTGTGCATG Parent 2 SNP sequence = GAGCAGCAGACATTGTGCATG SNP = C/T SNP structure (UNICODE) = CACTCAGATGYTGTCCTCGTC Parent 1 SNP sequence = CACTCAGATGCTGTCCTCGTC Parent 2 SNP sequence = CACTCAGATGTTGTCCTCGTC
Probe for Locus	baak30l02
Locus	k00407
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ATP-dependent Clp protease proteolytic subunit (ClpP1) [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ACAGCTTTGATGCCAGGAAC Right 5' - ACAATAACATCTGGCGAGGG
Sequence	BU986436
PCR size	438