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GrainGenes Marker Report: k00411

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Locus	k00411
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak27p14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/C SNP structure (UNICODE) = AATATATATAYGTTATTAGTC Parent 1 SNP sequence = AATATATATATGTTATTAGTC Parent 2 SNP sequence = AATATATATACGTTATTAGTC SNP = C/T SNP structure (UNICODE) = AGCATATATTYGAAAGATGAC Parent 1 SNP sequence = AGCATATATTCGAAAGATGAC Parent 2 SNP sequence = AGCATATATTTGAAAGATGAC SNP = N/T SNP structure (UNICODE) = CTTGCTTAGGN/TGGCATCTATG Parent 1 SNP sequence = CTTGCTTAGGNGGCATCTATG Parent 2 SNP sequence = CTTGCTTAGGTGGCATCTATG SNP = A/N SNP structure (UNICODE) = GATAGTCTAAA/NAGATGCATGA Parent 1 SNP sequence = GATAGTCTAAAAGATGCATGA Parent 2 SNP sequence = GATAGTCTAANAGATGCATGA
Probe for Locus	baak27p14
Locus	k00411
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative signal recognition particle 68K protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAGAACCTTTTGCGTTGGTG Right 5' - AAGAGGCAGACCTTCGACAA
Sequence	BJ467835
PCR size	372