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GrainGenes Marker Report: k00427

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Locus	k00427
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 156.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak2e06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/G SNP structure (UNICODE) = AACTTTTTTCKTAATCAATTA Parent 1 SNP sequence = AACTTTTTTCTTAATCAATTA Parent 2 SNP sequence = AACTTTTTTCGTAATCAATTA SNP = G/A SNP structure (UNICODE) = ATTTCTGTAARTAACTAATCC Parent 1 SNP sequence = ATTTCTGTAAGTAACTAATCC Parent 2 SNP sequence = ATTTCTGTAAATAACTAATCC
Probe for Locus	baak2e06
Locus	k00427
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = SMC1 protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - ATCCGTCAAATGACTTGGGA Right 5' - TCAGCCAATTCCAGCAGTTA
Sequence	AV911966
PCR size	389