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GrainGenes Marker Report: k00431

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Locus	k00431
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 180.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak30m11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/C SNP structure (UNICODE) = CTACGCCTACYAATGTTCCAT Parent 1 SNP sequence = CTACGCCTACTAATGTTCCAT Parent 2 SNP sequence = CTACGCCTACCAATGTTCCAT SNP = A/G SNP structure (UNICODE) = TGTTCCATCCRTTCATTCTTG Parent 1 SNP sequence = TGTTCCATCCATTCATTCTTG Parent 2 SNP sequence = TGTTCCATCCGTTCATTCTTG SNP = T/G SNP structure (UNICODE) = GTACAATTGTKTGGATCAGTG Parent 1 SNP sequence = GTACAATTGTTTGGATCAGTG Parent 2 SNP sequence = GTACAATTGTGTGGATCAGTG
Probe for Locus	baak30m11
Locus	k00431
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = MATE efflux family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TACAAATTCGGGAGGAGTGG Right 5' - GCTCATGGAGAAGATGGAGG
Sequence	BJ458126
PCR size	376