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GrainGenes Marker Report: k00468

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Locus	k00468
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 278.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak31e03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/G SNP structure (UNICODE) = TTGTCCGACTRCATAAGGAAA Parent 1 SNP sequence = TTGTCCGACTACATAAGGAAA Parent 2 SNP sequence = TTGTCCGACTGCATAAGGAAA SNP = A/C SNP structure (UNICODE) = CTCCCTCGCAMCCGCTCATCC Parent 1 SNP sequence = CTCCCTCGCAACCGCTCATCC Parent 2 SNP sequence = CTCCCTCGCACCCGCTCATCC SNP = A/T SNP structure (UNICODE) = ACAGAACATTWTCCTCCCTCG Parent 1 SNP sequence = ACAGAACATTATCCTCCCTCG Parent 2 SNP sequence = ACAGAACATTTTCCTCCCTCG SNP = T/C SNP structure (UNICODE) = TGATTAAGATYCATCTAAATT Parent 1 SNP sequence = TGATTAAGATTCATCTAAATT Parent 2 SNP sequence = TGATTAAGATCCATCTAAATT
Probe for Locus	baak31e03
Locus	k00468
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir D96778 unknown protein F9E10.27 [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - ATGTCGTAGGCCATCGTCTC Right 5' - AATCTTCGTCCTCCAGCAGA
Sequence	BJ458240
PCR size	360