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GrainGenes Marker Report: k00471

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Locus	k00471
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 156.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak28g14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = G/A SNP structure (UNICODE) = CATTCTCAGTRAATGCCCAGC Parent 1 SNP sequence = CATTCTCAGTGAATGCCCAGC Parent 2 SNP sequence = CATTCTCAGTAAATGCCCAGC SNP = T/A SNP structure (UNICODE) = ACTTGACGCAWAGATAAAACA Parent 1 SNP sequence = ACTTGACGCATAGATAAAACA Parent 2 SNP sequence = ACTTGACGCAAAGATAAAACA SNP structure (UNICODE) = AGAAAGATGARCAGCCACTGG Parent 1 SNP sequence = AGAAAGATGAGCAGCCACTGG Parent 2 SNP sequence = AGAAAGATGAACAGCCACTGG SNP = A/T SNP structure (UNICODE) = ACTGGTTCATWAAAAGGCTAC Parent 1 SNP sequence = ACTGGTTCATAAAAAGGCTAC Parent 2 SNP sequence = ACTGGTTCATTAAAAGGCTAC SNP = G/C SNP structure (UNICODE) = AATCGAGGATSTGAATCACAA Parent 1 SNP sequence = AATCGAGGATGTGAATCACAA Parent 2 SNP sequence = AATCGAGGATCTGAATCACAA
Probe for Locus	baak28g14
Locus	k00471
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AACGCATTCTCCAGAACACC Right 5' - CGCTTCAAGATGCTGTCAAA
Sequence	BJ457606
PCR size	374