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GrainGenes Marker Report: k00494

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Locus	k00494
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 275
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak31p06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/- SNP structure (UNICODE) = AAACAGAGGCT/-GATTTTTTGT Parent 1 SNP sequence = AAACAGAGGCTGATTTTTTGT Parent 2 SNP sequence = AAACAGAGGC-GATTTTTTGT SNP = G/A SNP structure (UNICODE) = TTGGTAAGACRTGCTGCTTAT Parent 1 SNP sequence = TTGGTAAGACGTGCTGCTTAT Parent 2 SNP sequence = TTGGTAAGACATGCTGCTTAT
Probe for Locus	baak31p06
Locus	k00494
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative oxygenase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGCTCGCTCAAATGTACAAA Right 5' - GTTCTTGCCGGGTTACTGAA
Sequence	BJ458423
PCR size	351