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GrainGenes Marker Report: k00502

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Locus	k00502
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 149.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak34b17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = CTACAAGGGARGCAGCCCAGG Parent 1 SNP sequence = CTACAAGGGAGGCAGCCCAGG Parent 2 SNP sequence = CTACAAGGGAAGCAGCCCAGG SNP = G/C SNP structure (UNICODE) = AAAATACAGTSCCGACCAAGA Parent 1 SNP sequence = AAAATACAGTGCCGACCAAGA Parent 2 SNP sequence = AAAATACAGTCCCGACCAAGA SNP = G/T SNP structure (UNICODE) = GAGCTAGCGCKGGCAAGACCA Parent 1 SNP sequence = GAGCTAGCGCGGGCAAGACCA Parent 2 SNP sequence = GAGCTAGCGCTGGCAAGACCA
Probe for Locus	baak34b17
Locus	k00502
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCTCAAGCATGTCAACCAAA Right 5' - TCTAATTCCAGCAGCAACCC
Sequence	BJ458964
PCR size	402