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GrainGenes Marker Report: k00504

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Locus	k00504
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 164.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak34p05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TspRI SNP = T/C SNP structure (UNICODE) = GACACTCAAGYAGTGCGTCGA Parent 1 SNP sequence = GACACTCAAGTAGTGCGTCGA Parent 2 SNP sequence = GACACTCAAGCAGTGCGTCGA Recognized sequence for CAPs locus = CASTGNN
Probe for Locus	baak34p05
Locus	k00504
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Phenylalanine ammonia-lyase pir T06545 phenylalanine ammonia-lyase (EC 4.3.1.5) - wheat
Type	PCR
PCR primers	Left 5' - ACAACGAGAAGCCGACACTT Right 5' - AGAGCTTCGGCAGGTTTACA
Sequence	BJ459164
PCR size	370