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GrainGenes Marker Report: k00506

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Locus	k00506
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 19.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak31p11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BspT104I SNP = G/A SNP structure (UNICODE) = TTGCGCCTTCRAACAATGAAT Parent 1 SNP sequence = TTGCGCCTTCGAACAATGAAT Parent 2 SNP sequence = TTGCGCCTTCAAACAATGAAT Recognized sequence for CAPs locus = TTCGAA
Probe for Locus	baak31p11
Locus	k00506
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - ACCCAAAAGGCCAAGCTATT Right 5' - TGTCATTTGCGAGGATGTGT
Sequence	BJ458428
PCR size	394