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GrainGenes Marker Report: k00513

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Locus	k00513
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 356.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak33n16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = A/T SNP structure (UNICODE) = GAAACATAATWCAGCTACAAA Parent 1 SNP sequence = GAAACATAATACAGCTACAAA Parent 2 SNP sequence = GAAACATAATTCAGCTACAAA SNP = G/T SNP structure (UNICODE) = AACGCTGCCGKGGACGCTACC Parent 1 SNP sequence = AACGCTGCCGGGGACGCTACC Parent 2 SNP sequence = AACGCTGCCGTGGACGCTACC SNP structure (UNICODE) = CACCGAGGGCWCACTCGGATA Parent 1 SNP sequence = CACCGAGGGCACACTCGGATA Parent 2 SNP sequence = CACCGAGGGCTCACTCGGATA SNP = T/C SNP structure (UNICODE) = AGCGGGTTCTYGAGGCCCACA Parent 1 SNP sequence = AGCGGGTTCTTGAGGCCCACA Parent 2 SNP sequence = AGCGGGTTCTCGAGGCCCACA SNP = C/A SNP structure (UNICODE) = TGAACAGGATMGCCCAGTATC Parent 1 SNP sequence = TGAACAGGATCGCCCAGTATC Parent 2 SNP sequence = TGAACAGGATAGCCCAGTATC
Probe for Locus	baak33n16
Locus	k00513
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AATGGAACTACGACGGATCG Right 5' - TCTGATATGTCACGGCCAAA
Sequence	BJ458896
PCR size	361