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GrainGenes Marker Report: k00516

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Locus	k00516
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 153.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak34p06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = T/G SNP structure (UNICODE) = TCGGAGGTCAKAATGATGTTC Parent 1 SNP sequence = TCGGAGGTCATAATGATGTTC Parent 2 SNP sequence = TCGGAGGTCAGAATGATGTTC SNP = A/G SNP structure (UNICODE) = CGCATTGCCTRCACAGCATAG Parent 1 SNP sequence = CGCATTGCCTACACAGCATAG Parent 2 SNP sequence = CGCATTGCCTGCACAGCATAG SNP structure (UNICODE) = AGATGGTACARGACACAGCAG Parent 1 SNP sequence = AGATGGTACAAGACACAGCAG Parent 2 SNP sequence = AGATGGTACAGGACACAGCAG
Probe for Locus	baak34p06
Locus	k00516
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = iron-deficiency induced gene [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - CGTTTCGATAACGGGAAAGA Right 5' - CTCTAGCAGGTCGTCAAGGG
Sequence	BJ459165
PCR size	363