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GrainGenes Marker Report: k00520

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Locus	k00520
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 44.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak32l04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/A SNP structure (UNICODE) = ATTCATAACARGAGCATCCTT Parent 1 SNP sequence = ATTCATAACAGGAGCATCCTT Parent 2 SNP sequence = ATTCATAACAAGAGCATCCTT SNP = -/A SNP structure (UNICODE) = CATGCTGGGC-/AGGGAAGGCCC Parent 1 SNP sequence = CATGCTGGGC-GGGAAGGCCC Parent 2 SNP sequence = CATGCTGGGCAGGGAAGGCCC SNP = C/T SNP structure (UNICODE) = CCCTCCGCGTYGCCACCGGGG Parent 1 SNP sequence = CCCTCCGCGTCGCCACCGGGG Parent 2 SNP sequence = CCCTCCGCGTTGCCACCGGGG SNP = G/T SNP structure (UNICODE) = TCTGCCCTTCKCCGTAGCCAA Parent 1 SNP sequence = TCTGCCCTTCGCCGTAGCCAA Parent 2 SNP sequence = TCTGCCCTTCTCCGTAGCCAA
Probe for Locus	baak32l04
Locus	k00520
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative monoterpene synthase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AATACCCGACAGATCACCCA Right 5' - GCGCTGTGCTTGATGAGATA
Sequence	BJ546078
PCR size	459