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GrainGenes Marker Report: k00528

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Locus	k00528
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 204.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak34p14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BcnI SNP = G/A SNP structure (UNICODE) = CAATGTCCCGRAGGATACGGA Parent 1 SNP sequence = CAATGTCCCGGAGGATACGGA Parent 2 SNP sequence = CAATGTCCCGAAGGATACGGA Recognized sequence for CAPs locus = CCSGG
Probe for Locus	baak34p14
Locus	k00528
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative translation initiation factor [Oryza sativa] gb AAK50586.1 putative translation initiation factor [Oryza sativa]
Type	PCR
PCR primers	Left 5' - TGTTTTCTCAGGGTGCACAG Right 5' - CGAAGACTGGATCGAAGAGG
Sequence	BJ459169
PCR size	437