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GrainGenes Marker Report: k00548

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Locus	k00548
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 114.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak33k20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = ATTTTGACTAYGGTAGCTTGG Parent 1 SNP sequence = ATTTTGACTACGGTAGCTTGG Parent 2 SNP sequence = ATTTTGACTATGGTAGCTTGG SNP = C/G SNP structure (UNICODE) = TTTGAACTATSTGGGACTGGG Parent 1 SNP sequence = TTTGAACTATCTGGGACTGGG Parent 2 SNP sequence = TTTGAACTATGTGGGACTGGG SNP = T/G SNP structure (UNICODE) = AAAGCTTAGAKAATAACTGGT Parent 1 SNP sequence = AAAGCTTAGATAATAACTGGT Parent 2 SNP sequence = AAAGCTTAGAGAATAACTGGT
Probe for Locus	baak33k20
Locus	k00548
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative DNA mismatch repair protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGCACACATTTACCAAGTGC Right 5' - CATCCATCAACGTCCTCCTC
Sequence	BJ458852
PCR size	442