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GrainGenes Marker Report: k00556

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Locus	k00556
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 63.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak32l16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 34 ] SNP = A/G SNP structure (UNICODE) = GCAGGTTGTCRAAGCCGATGA Parent 1 SNP sequence = GCAGGTTGTCAAAGCCGATGA Parent 2 SNP sequence = GCAGGTTGTCGAAGCCGATGA SNP = C/A SNP structure (UNICODE) = ACTGCACCTGMCGCAGGTTGT Parent 1 SNP sequence = ACTGCACCTGCCGCAGGTTGT Parent 2 SNP sequence = ACTGCACCTGACGCAGGTTGT SNP = G/A SNP structure (UNICODE) = AGCCGATGATRCGGACGTAGG Parent 1 SNP sequence = AGCCGATGATGCGGACGTAGG Parent 2 SNP sequence = AGCCGATGATACGGACGTAGG SNP = A/T SNP structure (UNICODE) = GGTTACTTCAWCTTGCACTTT Parent 1 SNP sequence = GGTTACTTCAACTTGCACTTT Parent 2 SNP sequence = GGTTACTTCATCTTGCACTTT SNP structure (UNICODE) = TCAGGTAGTCRACCTGCTTCA Parent 1 SNP sequence = TCAGGTAGTCGACCTGCTTCA Parent 2 SNP sequence = TCAGGTAGTCAACCTGCTTCA SNP = G/C SNP structure (UNICODE) = TGTGTGGCGTSGGTGCACCCG Parent 1 SNP sequence = TGTGTGGCGTGGGTGCACCCG Parent 2 SNP sequence = TGTGTGGCGTCGGTGCACCCG SNP structure (UNICODE) = AGTATCGGCCRTCGTAGTACC Parent 1 SNP sequence = AGTATCGGCCATCGTAGTACC Parent 2 SNP sequence = AGTATCGGCCGTCGTAGTACC SNP = C/G SNP structure (UNICODE) = TGACCTCCTCSACCTCATTGA Parent 1 SNP sequence = TGACCTCCTCCACCTCATTGA Parent 2 SNP sequence = TGACCTCCTCGACCTCATTGA SNP = A/C SNP structure (UNICODE) = GGAGGGCCTCMGTGGTGAGGG Parent 1 SNP sequence = GGAGGGCCTCAGTGGTGAGGG Parent 2 SNP sequence = GGAGGGCCTCCGTGGTGAGGG
Probe for Locus	baak32l16
Locus	k00556
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain precursor (clone pWS4.3) - wheat
Type	PCR
PCR primers	Left 5' - CGACGACACAGCCAGTAGAA Right 5' - AAGTAGATCCATGGCAACCG
Sequence	AV942803
PCR size	397