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GrainGenes Marker Report: k00563

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Locus	k00563
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 159.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak34l03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 26 ] SNP = T/C SNP structure (UNICODE) = TTCTTAGACAYGCATTATGTG Parent 1 SNP sequence = TTCTTAGACATGCATTATGTG Parent 2 SNP sequence = TTCTTAGACACGCATTATGTG SNP = G/A SNP structure (UNICODE) = TGCACATGAARGAAATAGATG Parent 1 SNP sequence = TGCACATGAAGGAAATAGATG Parent 2 SNP sequence = TGCACATGAAAGAAATAGATG SNP = A/G SNP structure (UNICODE) = ATGTCTGTTGRTGTACTTGTG Parent 1 SNP sequence = ATGTCTGTTGATGTACTTGTG Parent 2 SNP sequence = ATGTCTGTTGGTGTACTTGTG SNP = C/T SNP structure (UNICODE) = CATGGAAGTTYTCATAGGGAT Parent 1 SNP sequence = CATGGAAGTTCTCATAGGGAT Parent 2 SNP sequence = CATGGAAGTTTTCATAGGGAT SNP structure (UNICODE) = TACATCTATAYAATGTCATGG Parent 1 SNP sequence = TACATCTATACAATGTCATGG Parent 2 SNP sequence = TACATCTATATAATGTCATGG SNP structure (UNICODE) = GTGATAAATTYTCTGTGTCAT Parent 1 SNP sequence = GTGATAAATTTTCTGTGTCAT Parent 2 SNP sequence = GTGATAAATTCTCTGTGTCAT SNP = A/T SNP structure (UNICODE) = TAAACAAAGAWAAGCTTGATG Parent 1 SNP sequence = TAAACAAAGAAAAGCTTGATG Parent 2 SNP sequence = TAAACAAAGATAAGCTTGATG
Probe for Locus	baak34l03
Locus	k00563
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0043L24.12 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAGATGGCAGGCAATACAGA Right 5' - ATAGCTTAACTGCCGCCGTA
Sequence	BJ459101
PCR size	400