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GrainGenes Marker Report: k00564

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Locus	k00564
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 231.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak35b18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = T/A SNP structure (UNICODE) = TATGCAAGTTWTTGGCTGAAA Parent 1 SNP sequence = TATGCAAGTTTTTGGCTGAAA Parent 2 SNP sequence = TATGCAAGTTATTGGCTGAAA SNP = A/G SNP structure (UNICODE) = GCTGCTACCARATCAGCTACT Parent 1 SNP sequence = GCTGCTACCAAATCAGCTACT Parent 2 SNP sequence = GCTGCTACCAGATCAGCTACT SNP = C/A SNP structure (UNICODE) = TGGTACTTAAMGCCCCTGAGG Parent 1 SNP sequence = TGGTACTTAACGCCCCTGAGG Parent 2 SNP sequence = TGGTACTTAAAGCCCCTGAGG SNP = C/T SNP structure (UNICODE) = GCTTTTACTGYCCTTCAGGCC Parent 1 SNP sequence = GCTTTTACTGCCCTTCAGGCC Parent 2 SNP sequence = GCTTTTACTGTCCTTCAGGCC SNP structure (UNICODE) = CAGAGAAGTGRAAAAAAAAAG Parent 1 SNP sequence = CAGAGAAGTGAAAAAAAAAAG Parent 2 SNP sequence = CAGAGAAGTGGAAAAAAAAAG SNP structure (UNICODE) = ACTACAAAGCWTATGGTACTT Parent 1 SNP sequence = ACTACAAAGCTTATGGTACTT Parent 2 SNP sequence = ACTACAAAGCATATGGTACTT
Probe for Locus	baak35b18
Locus	k00564
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = anther ethylene-upregulated protein-like [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACGCTCACAACAAAAAGGA Right 5' - AAGAAGGACAAGACCTGCCA
Sequence	BJ455118
PCR size	425