Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k00575

[Submit comment/correction]

Locus	k00575
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 153.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak34o06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = A/G SNP structure (UNICODE) = TCGGAAGAGTRAATGTATCTT Parent 1 SNP sequence = TCGGAAGAGTAAATGTATCTT Parent 2 SNP sequence = TCGGAAGAGTGAATGTATCTT SNP = A/C SNP structure (UNICODE) = TGATCACAGCMGTGAGGATTC Parent 1 SNP sequence = TGATCACAGCAGTGAGGATTC Parent 2 SNP sequence = TGATCACAGCCGTGAGGATTC SNP = G/A SNP structure (UNICODE) = CATCTTTGGARCATGCTACAG Parent 1 SNP sequence = CATCTTTGGAGCATGCTACAG Parent 2 SNP sequence = CATCTTTGGAACATGCTACAG SNP = C/T SNP structure (UNICODE) = CGACAACTAAYTCCGGACGGA Parent 1 SNP sequence = CGACAACTAACTCCGGACGGA Parent 2 SNP sequence = CGACAACTAATTCCGGACGGA SNP structure (UNICODE) = ATCGGCGATAYGATATTAGAT Parent 1 SNP sequence = ATCGGCGATACGATATTAGAT Parent 2 SNP sequence = ATCGGCGATATGATATTAGAT
Probe for Locus	baak34o06
Locus	k00575
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OJ991113_30.3 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTTGTTGGTGCATTTCCTGA Right 5' - CGACTTTGTGAGCACCGATA
Sequence	BJ459145
PCR size	383