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GrainGenes Marker Report: k00578

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Locus	k00578
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 243.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak35m03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = A/T SNP structure (UNICODE) = CTACGTATCTWTCCTCGTACC Parent 1 SNP sequence = CTACGTATCTATCCTCGTACC Parent 2 SNP sequence = CTACGTATCTTTCCTCGTACC SNP = A/G SNP structure (UNICODE) = TCAGCAGACARTGCGTGTACG Parent 1 SNP sequence = TCAGCAGACAATGCGTGTACG Parent 2 SNP sequence = TCAGCAGACAGTGCGTGTACG SNP = G/T SNP structure (UNICODE) = TGCCTCCTCTKGCGAGAGATC Parent 1 SNP sequence = TGCCTCCTCTGGCGAGAGATC Parent 2 SNP sequence = TGCCTCCTCTTGCGAGAGATC SNP structure (UNICODE) = GTGCATTGTCWCCCCGCCTTG Parent 1 SNP sequence = GTGCATTGTCACCCCGCCTTG Parent 2 SNP sequence = GTGCATTGTCTCCCCGCCTTG SNP = T/G SNP structure (UNICODE) = GCTACACTTTKTTGTTACAAA Parent 1 SNP sequence = GCTACACTTTTTTGTTACAAA Parent 2 SNP sequence = GCTACACTTTGTTGTTACAAA SNP structure (UNICODE) = TCCTTACTTARACATAATGAA Parent 1 SNP sequence = TCCTTACTTAAACATAATGAA Parent 2 SNP sequence = TCCTTACTTAGACATAATGAA
Probe for Locus	baak35m03
Locus	k00578
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ribosomal protein L17-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACCGCCCTCCTCTTTTATTC Right 5' - CACCGACAGGACCGAATACT
Sequence	BJ459046
PCR size	434