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GrainGenes Marker Report: k00587

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Locus	k00587
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 17.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak39l17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = A/G SNP structure (UNICODE) = CGAGAGCTGGRCCATAATGGA Parent 1 SNP sequence = CGAGAGCTGGACCATAATGGA Parent 2 SNP sequence = CGAGAGCTGGGCCATAATGGA Recognized sequence for CAPs locus = GGCC
Probe for Locus	baak39l17
Locus	k00587
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0037C04.30 [Oryza sativa (japonica cultivar-group)] dbj BAB21187.1 contains ESTs D22419(C10991),AU100646(C10991)~similar to
Type	PCR
PCR primers	Left 5' - GATTTTGCTGCCCACCTTTA Right 5' - TAGACGCAGCAATGTTACGC
Sequence	BJ546370
PCR size	403