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GrainGenes Marker Report: k00590

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Locus	k00590
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 278.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak35m13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = TGAACTCCTCRGCTATCGAGA Parent 1 SNP sequence = TGAACTCCTCAGCTATCGAGA Parent 2 SNP sequence = TGAACTCCTCGGCTATCGAGA SNP = T/G SNP structure (UNICODE) = TCGACTGAATKTACTCTGCCA Parent 1 SNP sequence = TCGACTGAATTTACTCTGCCA Parent 2 SNP sequence = TCGACTGAATGTACTCTGCCA SNP = C/T SNP structure (UNICODE) = TGTTAAGACTYCAGAATGACT Parent 1 SNP sequence = TGTTAAGACTCCAGAATGACT Parent 2 SNP sequence = TGTTAAGACTTCAGAATGACT SNP structure (UNICODE) = CGATAAGTAAYTTGCCCGTGA Parent 1 SNP sequence = CGATAAGTAACTTGCCCGTGA Parent 2 SNP sequence = CGATAAGTAATTTGCCCGTGA
Probe for Locus	baak35m13
Locus	k00590
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0033G05.17 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GACCGGAAAGCATTCAAAAC Right 5' - CCGCCATCATCTACAACAAG
Sequence	BJ468229
PCR size	359