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GrainGenes Marker Report: k00603

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Locus	k00603
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 58.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak36b16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ApaLI SNP = A/G SNP structure (UNICODE) = ACACGTAGTARTGCACGTCAA Parent 1 SNP sequence = ACACGTAGTAATGCACGTCAA Parent 2 SNP sequence = ACACGTAGTAGTGCACGTCAA Recognized sequence for CAPs locus = GTGCAC
Probe for Locus	baak36b16
Locus	k00603
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative Glucan 1,3-beta-glucosidase precursor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATCTTGATGTTTGCCGAAGC Right 5' - TACGTTTGGTGCGGATTACA
PCR size	353