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GrainGenes Marker Report: k00616

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Locus	k00616
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 15.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak36f08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 27 ] SNP = C/T SNP structure (UNICODE) = TTACCGCCGGYGGCAACGTCC Parent 1 SNP sequence = TTACCGCCGGCGGCAACGTCC Parent 2 SNP sequence = TTACCGCCGGTGGCAACGTCC SNP = T/C SNP structure (UNICODE) = CCATGGACGGYCCGCAGGACT Parent 1 SNP sequence = CCATGGACGGTCCGCAGGACT Parent 2 SNP sequence = CCATGGACGGCCCGCAGGACT SNP = A/C SNP structure (UNICODE) = GCATGCGGTAMCTAGTTACCG Parent 1 SNP sequence = GCATGCGGTAACTAGTTACCG Parent 2 SNP sequence = GCATGCGGTACCTAGTTACCG SNP = C/A SNP structure (UNICODE) = GGGCGTGCATMGGGGCGGGAC Parent 1 SNP sequence = GGGCGTGCATCGGGGCGGGAC Parent 2 SNP sequence = GGGCGTGCATAGGGGCGGGAC SNP = A/G SNP structure (UNICODE) = CGACCTGGACRGCAGGCAGGT Parent 1 SNP sequence = CGACCTGGACAGCAGGCAGGT Parent 2 SNP sequence = CGACCTGGACGGCAGGCAGGT SNP = G/C SNP structure (UNICODE) = TGCAGGTTTTSGGGCACTCGA Parent 1 SNP sequence = TGCAGGTTTTGGGGCACTCGA Parent 2 SNP sequence = TGCAGGTTTTCGGGCACTCGA SNP structure (UNICODE) = CGACGTACTGRTCCTGGCAGA Parent 1 SNP sequence = CGACGTACTGATCCTGGCAGA Parent 2 SNP sequence = CGACGTACTGGTCCTGGCAGA
Probe for Locus	baak36f08
Locus	k00616
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Bowman-Birk type trypsin inhibitor pir TIBHB trypsin inhibitor (Bowman-Birk) - two-rowed barley
Type	PCR
PCR primers	Left 5' - CCGGTTCAACGAAATGAATC Right 5' - AAACCATCCATTCAAGCAGG
Sequence	BJ546204
PCR size	438