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GrainGenes Marker Report: k00623

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Locus	k00623
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 199.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak39o18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = A/G SNP structure (UNICODE) = AGCCAACATGRTACTCTCTAT Parent 1 SNP sequence = AGCCAACATGATACTCTCTAT Parent 2 SNP sequence = AGCCAACATGGTACTCTCTAT Recognized sequence for CAPs locus = GTAC
Probe for Locus	baak39o18
Locus	k00623
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = deoxymugineic acid synthase 1 [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - CCAAAAGGTAGCAAACAGGC Right 5' - AGCAGTCGACGAGGACAAAT
Sequence	BJ460219
PCR size	391