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GrainGenes Marker Report: k00626

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Locus	k00626
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 168.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak35n07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HphI SNP = A/C SNP structure (UNICODE) = TTCCGCTCTCMCCAACCGAGG Parent 1 SNP sequence = TTCCGCTCTCACCAACCGAGG Parent 2 SNP sequence = TTCCGCTCTCCCCAACCGAGG Recognized sequence for CAPs locus = NNNNNNNTCACC
Probe for Locus	baak35n07
Locus	k00626
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GACCAGGCAAGCCTACAAAA Right 5' - GGCTACCAGATCCACGACAT
Sequence	BJ455231
PCR size	425