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GrainGenes Marker Report: k00635

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Locus	k00635
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 109.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak3c01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = AluI SNP = C/G SNP structure (UNICODE) = CGGGCCGTAGSTGGCCTGGTT Parent 1 SNP sequence = CGGGCCGTAGCTGGCCTGGTT Parent 2 SNP sequence = CGGGCCGTAGGTGGCCTGGTT Recognized sequence for CAPs locus = AGCT SNP = T/C SNP structure (UNICODE) = CTCCTTGAGCYTGAACGGTCC Parent 1 SNP sequence = CTCCTTGAGCTTGAACGGTCC Parent 2 SNP sequence = CTCCTTGAGCCTGAACGGTCC
Probe for Locus	baak3c01
Locus	k00635
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = high light protein [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - GGGAACTGCAATACCTCCAA Right 5' - GGTGAAGAATGACGACGGTT
Sequence	AV912277
PCR size	350