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GrainGenes Marker Report: k00647

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Locus	k00647
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 88.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak3d11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = C/T SNP structure (UNICODE) = ACATGCGAAAYCACAAGAGAT Parent 1 SNP sequence = ACATGCGAAACCACAAGAGAT Parent 2 SNP sequence = ACATGCGAAATCACAAGAGAT SNP = A/G SNP structure (UNICODE) = ATACTATTAGRGTCTTCGGTA Parent 1 SNP sequence = ATACTATTAGAGTCTTCGGTA Parent 2 SNP sequence = ATACTATTAGGGTCTTCGGTA SNP = T/A SNP structure (UNICODE) = CTTTGTAGCAWTGCTGCCTAA Parent 1 SNP sequence = CTTTGTAGCATTGCTGCCTAA Parent 2 SNP sequence = CTTTGTAGCAATGCTGCCTAA SNP structure (UNICODE) = ATGCAGATGARCAATTATAGT Parent 1 SNP sequence = ATGCAGATGAACAATTATAGT Parent 2 SNP sequence = ATGCAGATGAGCAATTATAGT SNP = C/A SNP structure (UNICODE) = CTGCCTAACAMATTAAAATTT Parent 1 SNP sequence = CTGCCTAACACATTAAAATTT Parent 2 SNP sequence = CTGCCTAACAAATTAAAATTT
Probe for Locus	baak3d11
Locus	k00647
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - AGCTGAATCCAACCCAACAC Right 5' - AGTCGCAGAGCCACAAGTTC
Sequence	AV912301
PCR size	440