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GrainGenes Marker Report: k00654

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Locus	k00654
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 109.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak37g19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = G/C SNP structure (UNICODE) = AGGAGCAGATSAGGGAGCCGA Parent 1 SNP sequence = AGGAGCAGATGAGGGAGCCGA Parent 2 SNP sequence = AGGAGCAGATCAGGGAGCCGA Recognized sequence for CAPs locus = GATC
Probe for Locus	baak37g19
Locus	k00654
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0520B06.24 [Oryza sativa (japonica cultivar-group)] dbj BAB60914.1 OSJNBa0054L14.7 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGAAACGAGCAACATGCTA Right 5' - GGCCATTACCACCATTGTTC
Sequence	BJ546267
PCR size	353