Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k00662

[Submit comment/correction]

Locus	k00662
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 181.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak36a14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = CTATGAATCAYGCTCATAACA Parent 1 SNP sequence = CTATGAATCACGCTCATAACA Parent 2 SNP sequence = CTATGAATCATGCTCATAACA SNP = G/A SNP structure (UNICODE) = TCCTAATAGCRGCAGCAACAA Parent 1 SNP sequence = TCCTAATAGCGGCAGCAACAA Parent 2 SNP sequence = TCCTAATAGCAGCAGCAACAA
Probe for Locus	baak36a14
Locus	k00662
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative fructokinase [Oryza sativa (japonica cultivar-group)] dbj BAB92847.1 putative fructokinase [Oryza sativa (japonica cultivar-group)
Type	PCR
PCR primers	Left 5' - AAGTGCAATTTCTGCTGCCT Right 5' - TGGAGCCGACTTTTATCTGG
Sequence	BJ459184
PCR size	425