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GrainGenes Marker Report: k00669

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Locus	k00669
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 146.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak38n21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = C/T SNP structure (UNICODE) = CGATAGTGGAYGGCCGGAAGA Parent 1 SNP sequence = CGATAGTGGACGGCCGGAAGA Parent 2 SNP sequence = CGATAGTGGATGGCCGGAAGA SNP = T/C SNP structure (UNICODE) = ACATTGTCAAYCTCCAGGCCT Parent 1 SNP sequence = ACATTGTCAATCTCCAGGCCT Parent 2 SNP sequence = ACATTGTCAACCTCCAGGCCT SNP = A/G SNP structure (UNICODE) = TTCAAGTTGCRAAGCAAGCCG Parent 1 SNP sequence = TTCAAGTTGCAAAGCAAGCCG Parent 2 SNP sequence = TTCAAGTTGCGAAGCAAGCCG SNP structure (UNICODE) = TCCAGCCAGGRAAACACCGTT Parent 1 SNP sequence = TCCAGCCAGGAAAACACCGTT Parent 2 SNP sequence = TCCAGCCAGGGAAACACCGTT SNP structure (UNICODE) = ACTTATTCATYGTGGATACGT Parent 1 SNP sequence = ACTTATTCATTGTGGATACGT Parent 2 SNP sequence = ACTTATTCATCGTGGATACGT
Probe for Locus	baak38n21
Locus	k00669
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AAGTGTCTTGGCTCCTGGAA Right 5' - GGTCGAGTGACCTTGTCGAT
Sequence	BJ459945
PCR size	486