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GrainGenes Marker Report: k00674

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Locus	k00674
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 71.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak40c08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = AluI SNP = N/A SNP structure (UNICODE) = ATATATAACAN/AGAAGAGAGCT Parent 1 SNP sequence = ATATATAACANGAAGAGAGCT Parent 2 SNP sequence = ATATATAACAAGAAGAGAGCT Recognized sequence for CAPs locus = AGCT SNP = G/A SNP structure (UNICODE) = CTGCATTGCARCTCTGTGTTA Parent 1 SNP sequence = CTGCATTGCAGCTCTGTGTTA Parent 2 SNP sequence = CTGCATTGCAACTCTGTGTTA
Probe for Locus	baak40c08
Locus	k00674
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = probable phosphatidate cytidylyltransferase [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - TTATAACCCAGCAGGCAACA Right 5' - GCTGGACATGACTGAGGAGG
Sequence	BJ460271
PCR size	371