Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k00681

[Submit comment/correction]

Locus	k00681
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 112
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak42e22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = GAAAATCTGCRGGCGTTCATC Parent 1 SNP sequence = GAAAATCTGCGGGCGTTCATC Parent 2 SNP sequence = GAAAATCTGCAGGCGTTCATC SNP = T/C SNP structure (UNICODE) = ACACCCACGTYTGAAAATCTG Parent 1 SNP sequence = ACACCCACGTTTGAAAATCTG Parent 2 SNP sequence = ACACCCACGTCTGAAAATCTG
Probe for Locus	baak42e22
Locus	k00681
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein F8D20.40 - Arabidopsis thaliana emb CAA20023.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GAACGACAAAGATGATGGCA Right 5' - CATTGATTGACACCACCAGC
Sequence	BJ460807
PCR size	447