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GrainGenes Marker Report: k00686

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Locus	k00686
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 275.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak40c12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/C SNP structure (UNICODE) = ACAGCAGAGTSGCAATTACAT Parent 1 SNP sequence = ACAGCAGAGTGGCAATTACAT Parent 2 SNP sequence = ACAGCAGAGTCGCAATTACAT SNP = T/C SNP structure (UNICODE) = AAGATAGCCCYTTGAAAAAAG Parent 1 SNP sequence = AAGATAGCCCTTTGAAAAAAG Parent 2 SNP sequence = AAGATAGCCCCTTGAAAAAAG SNP structure (UNICODE) = CGTCTAGCTTYGTCAGAATGA Parent 1 SNP sequence = CGTCTAGCTTTGTCAGAATGA Parent 2 SNP sequence = CGTCTAGCTTCGTCAGAATGA SNP = T/G SNP structure (UNICODE) = CCCCTTCGCCKACACCAACAA Parent 1 SNP sequence = CCCCTTCGCCTACACCAACAA Parent 2 SNP sequence = CCCCTTCGCCGACACCAACAA
Probe for Locus	baak40c12
Locus	k00686
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = chloroplast SRP receptor cpFtsY precursor [Zea mays]
Type	PCR
PCR primers	Left 5' - AAATTACACCGGGCATTGTG Right 5' - ATGGGCTGAGAAAGTCCCTT
Sequence	BJ452438
PCR size	416