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GrainGenes Marker Report: k00689

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Locus	k00689
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 204
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak41d17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 24 ] SNP = T/A SNP structure (UNICODE) = ACATGCATGGWCAATTTTACG Parent 1 SNP sequence = ACATGCATGGTCAATTTTACG Parent 2 SNP sequence = ACATGCATGGACAATTTTACG SNP = C/T SNP structure (UNICODE) = GTGGACTTCTYCTTGGCGGCG Parent 1 SNP sequence = GTGGACTTCTCCTTGGCGGCG Parent 2 SNP sequence = GTGGACTTCTTCTTGGCGGCG SNP = G/A SNP structure (UNICODE) = TGGCCTCGCCRCCCATCTTTT Parent 1 SNP sequence = TGGCCTCGCCGCCCATCTTTT Parent 2 SNP sequence = TGGCCTCGCCACCCATCTTTT SNP = T/G SNP structure (UNICODE) = TCGGTGGCCGKCTTCTTCACG Parent 1 SNP sequence = TCGGTGGCCGTCTTCTTCACG Parent 2 SNP sequence = TCGGTGGCCGGCTTCTTCACG SNP = C/A SNP structure (UNICODE) = TTCACGGCCTMCGTCTTCTCG Parent 1 SNP sequence = TTCACGGCCTCCGTCTTCTCG Parent 2 SNP sequence = TTCACGGCCTACGTCTTCTCG SNP = T/C SNP structure (UNICODE) = TCTGCAGCGGYGTCCTGGACA Parent 1 SNP sequence = TCTGCAGCGGTGTCCTGGACA Parent 2 SNP sequence = TCTGCAGCGGCGTCCTGGACA
Probe for Locus	baak41d17
Locus	k00689
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein (clone ES2A) - barley emb CAA55976.1 ES2A [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - TCAGAATCCTGCATCGACAC Right 5' - TACACTCCGGATGATGACGA
Sequence	BJ460544
PCR size	384