Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k00695

[Submit comment/correction]

Locus	k00695
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 157.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak43e16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = T/C SNP structure (UNICODE) = ACATGTTGTAYAGGTCTTCGA Parent 1 SNP sequence = ACATGTTGTATAGGTCTTCGA Parent 2 SNP sequence = ACATGTTGTACAGGTCTTCGA Recognized sequence for CAPs locus = GTAC
Probe for Locus	baak43e16
Locus	k00695
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = myb family transcription factor [Arabidopsis thaliana] dbj BAA97173.1 Myb-related transcription activator-like [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AAGAATACGCCAACACGACC Right 5' - TGTGCAAGCTGAGGATTTTG
Sequence	BJ461039
PCR size	454