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GrainGenes Marker Report: k00701

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Locus	k00701
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 138.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak41d22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = A/G SNP structure (UNICODE) = CACGTCTCTARGACAAGAAAC Parent 1 SNP sequence = CACGTCTCTAAGACAAGAAAC Parent 2 SNP sequence = CACGTCTCTAGGACAAGAAAC Recognized sequence for CAPs locus = CTAG
Probe for Locus	baak41d22
Locus	k00701
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0006M15.16 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AATGAGTCCGTCTTTGCAGG Right 5' - TGGGTTGTGGAATTATCGGT
Sequence	BJ460547
PCR size	360